The slime mould mofope has a very small serine protease with the sequence:
GSVEFKITSGGNGPAELLKALIQGSGSVTITWEVHGNGNSALELALQLLKGSGTVEFIDGNGN --SSSSSS-----HHHHHHHHHH----SSSSSSSS-----HHHHHHHHHH---SSSSSS---- S H D |
Can you find its active site residues? Motivate your answer in less than 20 words.
Most active sites in nature are one of two:
We also know that active sites tend to sit at the C-terminal end of the strands in α - β - α - β - etcetera proteins. You only find one of each of His, Asp, Ser 'after' the predicted β-strands, and only one D and no Es. So the SHD indicated form the only solution.