Distance Dependent Contacts Of One Residue
with polar residues
Introduction
This server will give you for one residue
all contacts it makes with
polar residues (Asp, Glu, Lys, His, Arg) in the PDB file.
Methods
The pairs of contacting atoms
will be listed. The left side lists the atoms in the
selected residue, the right atom column lists the atoms
in all polar residues in the PDB file.
The contact distance and the type of contact
(where S means Side chain and B means Backbone) are listed too.
Two residues are called `in contact` if they share a pair of
atoms that have a distance lexx than X Ångstrom between
their Van der Waals surfaces. This server does the calculation
for X is 1 - 5 Ångstrom in 1 Ångstrom steps.
If you have detected any error, or have any question or suggestion,
please send an Email to Gert Vriend.
Roland Krause, Maarten L Hekkelman, Jens E Nielsen,
Gert Vriend.
