Distance Dependent Contacts Of One Residue with polar residues


This server will give you for one residue all contacts it makes with polar residues (Asp, Glu, Lys, His, Arg) in the PDB file.


The pairs of contacting atoms will be listed. The left side lists the atoms in the selected residue, the right atom column lists the atoms in all polar residues in the PDB file.
The contact distance and the type of contact (where S means Side chain and B means Backbone) are listed too. Two residues are called `in contact` if they share a pair of atoms that have a distance lexx than X Ångstrom between their Van der Waals surfaces. This server does the calculation for X is 1 - 5 Ångstrom in 1 Ångstrom steps.
Either Choose a pdb-file,
Or Choose your own file
Residue number

If you have detected any error, or have any question or suggestion, please send an Email to Gert Vriend.
Roland Krause, Maarten L Hekkelman, Jens E Nielsen, Gert Vriend.

Last modified Mon Jan 29 12:33:00 2018