Hydrogen (bonds)

• Hydrogen bonded pairs in DNA/RNA
• This server lists the pairs of nucleic acids that are connected by hydrogen bonds.
  
  
  
• Potential Hydrogen Bonds
• This module computes all possible hydrogen bonds in your molecule. It will not determine which bonds would be most favorable; you can use the "Optimal Hydrogen Bonds" server for that purpose.
  
  
  
• Optimal Hydrogen Bonding Network
• This server will compute the best possible hydrogen bond network.
  
  
  
• Add Protons to the Structure
• All missing protons will be added to the structure.
  
  
  
• IUPAC atom name validation
• This server will read your PDB file, list all atoms and indicate deviations from the IUPAC nomenclature rules. A PDB file with the corrected nomenclature will be made.