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Contacts with symmetry related molecules in a crystal


Introduction

This server calculates contacts between pairs of atoms. Pairs of atoms are analysed only if both atoms sit in different asymmetric units. The contact cutoff is 0.5 Ångstrom.

Methods

A contact is defined as two atoms for which the distance between the Van der Waals surfaces is less than 0.5 Ångstrom.
WHAT IF uses the following Van der Waals radii: C:1.8 Ångstrom; O:1.4 Ångstrom; N:1.7 Ångstrom; S:2.0 Ångstrom.
Either Choose a pdb-file,
Or Choose your own file

If you have detected any error, or have any question or suggestion, please send an Email to Gert Vriend.
Roland Krause, Maarten L Hekkelman, Jens E Nielsen, Gert Vriend.


Last modified Mon Jan 29 12:33:00 2018