Material linked from bioinformatics course


Aligning 1PPT and 1PP2 with CLUSTAL

The sequences of 1PPT and 1PP2 are given in the box below in the format that CLUSTAL needs. Again, don't forget those funny >  symbols...

>1PPT
GPSQPTYPGDDAPVEDLIRFYDNLQQYLNVVTRHRY
>1PP2
SKPTYPGDRAPGEDLIRYYDNINQYLQVVTR

Here you find CLUSTAL in MRS.

First, cut-n-paste the sequences from the box into the CLUSTAL window. And as second step, click 'Run ClustalW' to make the alignment go a bit faster.

And this is the result you should get.