Atomic contacts

• Interatomic bumps.
• Check for (too) short interatomic distances (bumps).
  
  
  
• Residue contact diagonal plot
• A two dimensional plot is generated. The sequence is placed along each of the axes. Little squares indicate that the corresponding residues on the two axes make at least one atomic contact in the PDB file.
  
  
  
• Interatomic contacts.
• This server calculates contacts between all atoms in your PDB file, including water. All contacts are listed only once. Symmetry contacts are excluded. Contact distance 0.25 Ångstrom.
  
  
  
• Interatomic contacts.
• This server calculates contacts between all atoms in your PDB file, including water. All contacts are listed only once. Symmetry contacts are excluded. Contact distance 1.0 Ångstrom.
  
  
  
• Interatomic contacts.
• This server calculates contacts between all atoms in your PDB file, including water. All contacts are listed twice, once as a contact made by the first residue of the contact pair, and later in the list again as a contact by the other contact partner.
  
  
  
• Interatomic contacts.
• This server calculates contacts between all atoms in your PDB file, including water. All contacts are listed only once. Contacts with symmetry related molecules in the crystal are listed too.
  
  
  
• Secondary structure contacts.
• This server calculates contacts between secondary structure elements in your PDB file. Per secondary structure pair all atomic contacts are listed. Contacts with symmetry related molecules in the crystal are not listed.
  
  
  
• C-alpha contacts.
• Calculates C-alpha pairs within 10 Angstrom.
  
  
  
• C-beta contacts.
• Calculates C-beta pairs within 10 Angstrom.
  
  
  
• Salt bridges.
• Calculates saltbridges.
  
  
  
• Salt bridges up to 12 Angstrom.
• Calculates saltbridges.
  
  
  
• Salt bridges (with modelled side chains, when needed).
• Calculates saltbridges.
  
  
  
• Inter-chain contact description.
• Inter-chain contacts
  
  
  
• Inter-chain atomic bumps.
• Check for (too) short interatomic distances (bumps) between chains.